Knowledge: databases
- Genomics ∞
- Proteomics ∞
See Also:
- science → biology → bioinformatics → online services → genome databases
- science → biology → bioinformatics → software
- science → biology → genetics → eukaryotic → databases and maps
- science → biology → genetics → software
Links
- Mirage
http://www.ifti.org/ - Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction. From the Institute for Transcriptional Informatics (IFTI), USA.
- GeneExpress
http://wwwmgs.bionet.nsc.ru/mgs/systems/geneexpress/ - Designed for analysis of genomic regulatory sequences of higher eukaryotes. Includes several databases and programs for visualization of the information contained. From the Laboratory of Theoretical Genetics of the Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science in Novosibirsk (Russia).
- Exploring the Metabolic and Generic Control of Gene Expression
http://cmgm.stanford.edu/pbrown/explore/ - Database with the data for the experiments in the paper - DeRisi et. al. Science 278: 680-686. Includes text files that can be downloaded. The original paper requires a subscription fee.
- Stanford Microarray Database
http://genome-www5.stanford.edu/ - Data from microarray experiments, and the corresponding image files. From Stanford University, USA.
- WormBase
http://www.wormbase.org/ - Data bases on the genetics of C elegans and related nematodes.
- Gene Expression in Tooth
http://bite-it.helsinki.fi/ - Database on the expression of different genes in the developing tooth.
- Gene Expression Omnibus
http://www.ncbi.nlm.nih.gov/geo/ - Database of gene expression data from NCBI (National Center for Biotechnical Information). Includes a definable search by different characteristics.
- Rice Transcription Factor Database
http://ricetfdb.bio.uni-potsdam.de/ - RiceTFDB is a public database of rice genes involved in transcriptional control. From the University of Potsdam, Berlin, Germany.
- Novartis Gene Expression Atlas
http://expression.gnf.org - Database on gene expression in men and mice.
- GeneSifter Data Center
http://www.genesifter.net/web/dataCenter.html - Database for the GeneSifter microarray data analysis system in selected conditions. From ViZxlabs, Seattle, USA.
- Ribosomal Database Project
http://rdp.cme.msu.edu/ - From Center for Microbial Ecology, Michigan State University, USA
- The Database of Rice Transcription Factors (DRTF)
http://drtf.cbi.pku.edu.cn - Free of charge database of transcription factors of rice. From CBI, Peking University, China.
- Kyoto Encyclopedia of Genes and Genomes (KEGG)
http://www.genome.ad.jp/kegg/ - Graphical and hypertext-based information on biochemical pathways, including metabolic and regulatory pathways cell cycle and growth factor signaling. From Kanehisa Laboratories in the Bioinformatics Center of Kyoto University, Japan.
- GenePaint
http://www.genepaint.org - Database of gene expression patterns in the mouse embryo. From Max-Planck-Institute for Biophysical Chemistry, Dept. Genes and Behavior, Göttingen, Germany
- Allen Brain Atlas
http://www.brain-map.org - Database of gene expression patterns in the mouse brain.
- RNase P Database
http://www.mbio.ncsu.edu/RNaseP/ - A compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional structures, and accessory information.
- IRES Database
http://ifr31w3.toulouse.inserm.fr/iresdatabase - Database on gene expression with information on Internal Ribosome Entry Sites IRES. From INSERM, the French Institute of Health.
- SymAtlas
http://symatlas.gnf.org - Database on gene function and structure, from the Genomics Institute of the Novartis Research Foundation.
- MERNA
http://merna.lbl.gov/ - A data base of metal binding sites of RNA, from the Holbrooke Laboratory, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
- RNA GENiE
http://rnagene.lbl.gov/ - Database to locate RNA genes based on the premise that stable, functional RNAs share common structural elements and that sequences corresponding to these elements would occur preferentially in RNA genes, from the Hoolbrook Laboratory, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
- ArrayExpress
http://www.ebi.ac.uk/arrayexpress - Database of gene expression and other microarray data at the European Bioinformatics Institute (EBI), located at the Wellcome Trust Foundation in Cambridge, UK.
| Help build the largest human-edited directory on the web. |
| Submit a Site - Open Directory Project - Become an Editor |
Knowledge.com ™ directory, provided by Knowledge Matters Limited.
"Knowledge.com" is a Registered Trademark of Knowledge Matters Limited.